Papers
2024
Emmet A. Francis and Justin G. Laughlin and Jørgen S. Dokken and Henrik N. T. Finsberg and Christopher T. Lee and Marie E. Rognes and Padmini Rangamani. Spatial modeling algorithms for reactions and transport (SMART) in biological cells, (2024). [arΧiv] [BibTeΧ]
Dokken, Jørgen S.. ADIOS4DOLFINx: A framework for checkpointing in FEniCS, Journal of Open Source Software 9 (96) (2024). [doi.org/10.21105/joss.06451] [BibTeΧ]
2023
Baratta, Igor A. and Dean, Joseph P. and Dokken, Jørgen S. and Habera, Michal and Hale, Jack S. and Richardson, Chris N. and Rognes, Marie E. and Scroggs, Matthew W. and Sime, Nathan and Wells, Garth N.. DOLFINx: The next generation FEniCS problem solving environment, (2023). [doi.org/10.5281/zenodo.10447666] [BibTeΧ]
Justin G. Laughlin and Jørgen S. Dokken and Henrik N.t. Finsberg and Emmet A. Francis and Christopher T. Lee and Marie E. Rognes and Padmini Rangamani. SMART: Spatial Modeling Algorithms for Reactions and Transport, Journal of Open Source Software 8 (90) (2023). [doi.org/10.21105/joss.05580] [BibTeΧ]
2022
Scroggs, Matthew W. and Dokken, Jørgen S. and Richardson, Chris N. and Wells, Garth N.. Construction of Arbitrary Order Finite Element Degree-of-Freedom Maps on Polygonal and Polyhedral Cell Meshes, ACM Transactions on Mathematical Software 48 (2) (2022). [doi.org/10.1145/3524456] [BibTeΧ]
Arbes, Florian and Jensen, Øyvind and Mardal, Kent-Andre and Dokken, Jørgen S.. Model order reduction of solidification problems, (2022). [doi.org/10.23967/eccomas.2022.179] [BibTeΧ]
2020
J. S. Dokken and S. K. Mitusch and S W. Funke. Automatic shape derivatives for transient PDEs in FEniCS and Firedrake, (2020). [arΧiv] [BibTeΧ]
2019
J. S. Dokken, S. W. Funke, A.Johansson, S.Schmidt. Shape Optimization Using the Finite Element Method on Multiple Meshes with Nitsche Coupling, SIAM Journal on Scientific Computing 41 (3) (2019) A1923–A1948. [doi.org/10.1137/18M1189208] [BibTeΧ]
S. K. Mitusch and S. W. Funke and J. S. Dokken. dolfin-adjoint 2018.1: automated adjoints for FEniCS and Firedrake, Journal of Open Source Software 4 (38) (2019). [doi.org/10.21105/joss.01292] [BibTeΧ]
2017
J. S. Dokken and J. Grue and L. P. Karstensen. Wave analysis of porous geometry with linear resistance law, Journal of Marine Science and Application 16 (4) (2017) 480–489. [doi.org/10.1007/s11804-017-1438-2] [BibTeΧ]
J. S. Dokken and J. Grue and L. P. Karstensen. Wave forces on porous geometries with linear and quadratic pressure-velocity relations, Proc. Int. Workshop Water Waves Float. Bodies 32 (2017). [pdf] [BibTeΧ]
For related research, have a look at my Google scholar page.
Theses
J. S. Dokken. Shape Optimization for Finite Element Methods, University of Oslo, PhD thesis (2020). [BibTeΧ]